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    • WP1 – Development of Laboratory Tools and Resources
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Nextflow and nf-core workshop by CRG

Reproducible genomics workflows using Nextflow and nf-core

Repository for the BovReg Nextflow workshop organized by the CRG on 17-20 November 2020.


  • Introduction to Nextflow – Evan Floden (Day 1_1)
  • Flash talks – Speakers: Daniel Fischer (Day 1_2)
  • Introduction to nf-core – Phil Ewels (Day 2_1)
  • Flash talks -Speakers: S. Jayaraman, Manthri B. Kiran, Meenu Bhati & Praveen K. Chitneedi (Day 2_2)
  • Nf-core pipelines – Harshil Patel (Day 3_1)
  • Flash talks – Speakers: Andreia Amaral, Gabriel Moreira and Tuan Nguyen (Day 3_2)
  • Developing with nf-core – Phil Ewels (Day 3_3)
  • Introduction to DSL2 – Paolo Di Tommaso (Day 4_1)
  • Flash talks – Speakers: Cyril Kurylo, Yuliaxis Ramayo Caldas & Jani de Vos (Day 4_2)
  • Master of Pores, a Nanopore data processing pipeline – Luca Cozzuto (Day 4_3)

Project Framework

This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 815668.

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Contacts

Coordinator: kuehn[at]fbn-dummerstorf.de

Project manager: wesnigk[at]fbn-dummerstorf.de

Communication: riccardo[at]eaap.org

Dissemination: johanna.vilkki[at]luke.fi

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