ATACseq Course Registration

BovReg project will organize an onsite laboratory course on: ATAC-Seq: data generation and bioinformatic analysis, to be held during 19.-22.4.2022 at the University of Limoges, France. The host is Veronique Blanquet and her group at ULIM. Details on course schedules will be confirmed later, as well as accommodation suggestions. Follow us on social media to stay updated and not miss this opportunity!

When registering, applicants should include a brief justification of their participation highlighting their contribution to their projects and the connection to the FAANG community. Twelve (12) participants will be selected based on their justifications by the organizing group to the onsite part of the course; participation to the first day (online) is not limited by number.

DEADLINE for registrations: 15^th of March

The preliminary program consists of:

Tuesday 19.2. (can also be attended online), starting at noon

Welcome, and short presentations from attendees – Veronique Blanquet (ULIM)
From FAANG to Fork: Application of Highly Annotated Genomes to Improve Farmed Animal Production – Emily Clark (Roslin)
BovReg project overview – Christa Kuehn (FBN)
ATACseq: concept and technology – Anne-Sophie Ay-Berthomieu (Active Motif)
ATACseq data analysis /BovReg ATACSeq pipeline –Jose Espinosa-Carrasco (CRG)
Open chromatin landscape in a diverse catalogue of tissues from divergent breeds/crosses for functional annotation: the BovReg application Gabriel Costa (ULIEGE)
Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions – Mazdak Salavati (Roslin)

Wednesday 20.4. full day on-site wet lab

from purification of nuclei until library preparation, sequencing demonstration from libraries generated in earlier project

Thursday 21.4. hands-on bioinformatic analyses; instructors Jose and Björn (CRG); Gabriel (ULIEGE)

Bioinformatic analyses (data generated in earlier project); computers available from ULIM
Lunchtime visit to Limousine cattle Breed Center

Friday 22.4. hands-on bioinformatic analyses, until noon

DEADLINE for registrations: 15^th of March

Name*

First Last

Email*

Position*

Institution*

Institution address

Research interest*

What is your background knowledge in bioinformatics?*

Beginner

Intermediate

Familiar with the command line interface of unix systems

What is your motivation for attending the course? Please attach a brief description of your research and how it is related to the international FAANG effort*

Accepted file types: pdf, doc, docx, Max. file size: 20 MB.

Will you participate to:*

1 day only (online)

full course onsite

Are you happy for your email to be added to the participant list that will be made available to all participants?*

Yes

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ATACseq Course Registration

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